tracksegnet
latest
TrackSegNet:
Purposes
Installation and requirements
Prepare your data
Run the program
Analysis plots – toy example
Modules:
simulate_tracks
experimental_tracks
compute_features
generate_lstm_model
analysis
utils
Contributing:
Guidelines
tracksegnet
Index
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Index
A
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C
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E
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F
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G
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M
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P
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R
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S
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U
A
analysis
module
C
calculate_fold_180_0() (in module analysis)
check_parms() (in module utils)
compute_all_features() (in module compute_features)
compute_all_msd() (in module analysis)
compute_angles() (in module analysis)
(in module compute_features)
compute_displ() (in module analysis)
compute_displacements() (in module compute_features)
compute_dist() (in module compute_features)
compute_features
module
compute_mean_distances() (in module compute_features)
compute_msd() (in module analysis)
compute_ptm() (in module analysis)
compute_vac() (in module analysis)
convert_diffusion() (in module analysis)
convert_sigma() (in module analysis)
E
experimental_tracks
module
extract_1_csv() (in module experimental_tracks)
extract_1_mdf() (in module experimental_tracks)
extract_all_tracks() (in module experimental_tracks)
F
fill_gaps() (in module experimental_tracks)
fill_gaps_l1() (in module experimental_tracks)
G
generate_fbm_tracks() (in module simulate_tracks)
generate_lstm_model
module
generate_lstm_model() (in module generate_lstm_model)
get_color_list() (in module utils)
get_fbm() (in module simulate_tracks)
M
make_tracklet_lists() (in module analysis)
module
analysis
compute_features
experimental_tracks
generate_lstm_model
simulate_tracks
utils
P
plot_accuracy_over_window() (in module generate_lstm_model)
plot_angles() (in module analysis)
plot_displ() (in module analysis)
plot_proportion() (in module analysis)
plot_scatter_alpha_diffusion() (in module analysis)
plot_training_curves() (in module generate_lstm_model)
plot_vac() (in module analysis)
predict_states() (in module experimental_tracks)
R
run_track_simulation() (in module simulate_tracks)
S
simulate_tracks
module
U
utils
module
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